Tools/Protocols
Bioinformatics Tools
A toolbox for thorough metabolomic data analysis. The tool includes several methods for data processing, statistical analysis, biomarker analysis, integrative analysis and data interpretation.
2023
https://doi.org/10.1093/gigascience/giae005
Linear mixed-effects modeling for normalization of clinical metabolomics data by using subject metada.
2018
https://github.com/kwanjeeraw/lmm2met?tab=readme-ov-file
https://www.sciencedirect.com/science/article/pii/S200103701930025X?via%3Dihub
An R/Bioconductor package for gene set analysis (GSA) using a selection of available methods and starting from different kinds of gene level statistics.
2013
https://varemo.github.io/piano/
https://doi.org/10.1093/nar/gkt111