Publications

Research articles
    2020
  1. Hodge, K., Makjaroen, J., Robinson, J., Khoomrung, S. and Pisitkun, T. (2020) Deep Proteomic Deconvolution of Interferons and HBV Transfection Effects on a Hepatoblastoma Cell Line. ACS Omega.
  2. Liu, Y., Liu, Q., Krivoruchko, A., Khoomrung, S., Nielsen, J. (2020) Engineering yeast phospholipid metabolism for de novo oleoylethanolamide production Nature Chemical Biology, 16:197–205

  3. 2019
  4. Khoomrung, S., Nookaew, I. , Sen ,P., Olafsdottir, T.A., Persson, J., Moritz, T., Andersen, P., Harandi, A.M., Nielsen, J. (2019) Metabolic profiling and compound-class identification reveal alterations in serum triglyceride levels in mice immunized with human vaccine adjuvant Alum Journal of Proteome Research, 19(1):269–278
  5. Gaga, E.E., Harner, T., Dabek-Zlotorzynska, E., Celo, V., Evans, G.J., Jeong, C.H., Halappanavar, S., Jariyasopit, N. Su, Y. (2019) Polyurethane Foam (PUF) Disk Samplers for Measuring Trace Metals in Ambient Air Environmental Science & Technology Letters. 6(9):545-550
  6. Nyunt T, Britton M, Wanichthanarak K , Budamagunta M, Voss JC, Wilson DW, Rutledge JC, Aung HH.(2019) Mitochondrial oxidative stress-induced transcript variants of ATF3 mediate lipotoxic brain microvascular injury Free Radical Biology and Medicine. 143:25-46
  7. Jariyasopit N, Tung P, Su K,Halappanavar S,Evans G. J, Su Y, Khoomrung S, Harner M.(2019) Polycyclic aromatic compounds in urban air and associated inhalation cancer risks: A case study targeting distinct source sectors Environmental Pollution. 252:1882-1891
  8. Jeennor S, Anantayanon J, Panchanawaporn S, Khoomrung S, Chutrakula C, Laoteng K.(2019) Reengineering lipid biosynthetic pathways of Aspergillus oryzae for enhanced production of γ-linolenic acid and dihomo-γ-linolenic acid. Gene. 706:106-114.
  9. Wanichthanarakab K, Jeamsripongc S, Pornputtapongde N, Khoomrung S*. (2019) Accounting for biological variation with linear mixed-effects modelling improves the quality of clinical metabolomics data. Computational and Structural Biotechnology Journal. 17:611-618.

  10. 2018
  11. Guo Z, Khoomrung S, Nielsen J, Olsson L. (2018) Changes in lipid metabolism convey acid tolerance in Saccharomyces cerevisiae. Biotechnol Biofuels. 11 (1):297.

  12. 2017
  13. Rodriguez A, Chen Y, Khoomrung S, Özdemir E, Borodina I, Nielsen J. (2017) Comparison of the metabolic response to over-production of p-coumaric acid in two yeast strains. Metab. Eng. 44: 265-272.

  14. 2016
  15. Fletcher E, Feizi A, Bisschops MMM, Hallström BM, Khoomrung S, Siewers V, Nielsen J. (2016) Evolutionary engineering reveals divergent paths when yeast is adapted to different acidic environments. Metab. Eng. 39: 19-28.
  16. Olafsdottir TA, Lindqvist M, Nookaew I , Andersen PL, Maertzdorf J, Persson J, Weiner J, Zhang Y, Anderson J, Khoomrung S, Sen P, Agger EM, Coler R, Carter D, Meinke A, Kaufmann SHE, Reed SG, Harandi AM. (2016) Comparative Systems Biology Analysis Reveals Molecular Signature of Three Clinically Tested Vaccine Adjuvants. Sci. Rep. 6:39097.
  17. Tippmann S, Nielsen J, Khoomrung S*. (2016) Improved quantification of farnesene during microbial production from S. cerevisiae in two-liquid-phase fermentations. Talanta. 146: 100-106.

  18. 2015
  19. Khoomrung S*, Martinez JL, Tippmann, S, Jansa-Ard S, Buffing M, Nicastro R, Nielsen J. (2015) Expanded metabolite coverage of Saccharomyces cerevisiase extract through improved chloroform/methanol extraction and t-BDMS derivatization. Anal. Chem Res. 6:9-16.
  20. Qin J. G., Zhou Y. J., Krivoruchko A, Huang M, Liu L, Khoomrung S, Siewers S, Jiang B, Nielsen J. (2015) Modular pathway rewiring of Saccharomyces cerevisiae enables high-level production of L-ornithine. Nat Commun 6: 8224.
  21. Nicastro R, Tripodi F, Guzzi C, Reghellin V, Khoomrung S, Airoldi C, Nielsen J, Alberghina L, Coccetti P. (2015) Enhanced amino acid utilization sustains growth of cells lacking Snf1/AMPK. BBA- Mol Cell Res. 1853: 1615-1625.

  22. 2014
  23. Khoomrung S*, Raber G, Laoteng K, Francesconi KA. (2014) Identification and characterization of fish oil supplements based on fatty acid analysis combined with a hierarchical clustering algorithm. Eur Lipid Sci Tech. 116:795-804.
  24. Knuf C, Nookaew I, Remmers I, Khoomrung S, Brown S, Berry A, Nielsen J. (2014) Physiological Characterization of the High Malic Acid-Producing Aspergillus oryzae Strain 2103a-68. Appl Microbiol Biotechnol 98(8): 3517-3527.

  25. 2013
  26. Hussain A, Olausson H, Nilsson S, Nookaew I, Khoomrung S, Andersson L, Koskela A, Tuukkanen J, Ohlsson C, Holmag A. (2013) Maternal beef and postweaning herring diets increase bone mineral density and strength in mouse offspring. Exp Biol Med (Maywood). 238:1362-1369.
  27. Hussain A, Nookaew I, Khoomrung S, Andersson L, Larsson I, Hulthen L, Jansson N. Jakubowicz R, Nilsson S, Sandberg AS, Nielsen J, Holmang A. (2013) A maternal diet of fatty fish reduces body fat of offspring compared with a maternal diet of beef and a post-weaning diet of fish improves insulin sensitivity and lipid profile in adult C57BL/6 male mice. Acta Physiol. 209: 220-234.
  28. Khoomrung S, Chumnanpuen P, Jansa-Ard S, Ståhlman M, Nookaew I, Boren J, Nielsen J. (2013) Rapid quantification of yeast lipid using microwave-assisted total lipid extraction and HPLC-CAD. Anal Chem. 85: 4912-4919.

  29. 2012
  30. Khoomrung S, Chumnanpuen P, Jansa-ard S, Nookaew I, Nielsen J. (2012) Fast and accurate preparation fatty acid methyl esters by microwave-assisted derivatization in the yeast Saccharomyces cerevisiae. Appl Microbiol Biotechnol, 94: 1637-1646.
  31. Shi S, Valle-Rodríguez JO, Khoomrung S, Siewers V, Nielsen J. (2012) Functional expression of five wax ester synthases in Saccharomyces cerevisiae and their utility for biodiesel production. Biotechnol Biofuels, 5:7.

  32. 2009
  33. Raber G, Khoomrung S, Taleshi MS, Edmonds JS, Francesconi KA. (2009) Identification of arsenolipids with GC/MS. Talanta. 78: 1215-1218.

  34. 2008
  35. Khoomrung S, Laoteng K, Jitsue S, Cheevadhanarak S. (2008) Significance of fatty acid supplementation on profile of cell growth, fatty acid and gene expression of three desaturases in Mucor rouxii. Appl Microbiol Biotechnol. 80: 499 -506.

Review article
  1. Grapov D, Fahrmann F, Wanichthanarak K, Khoomrung S. (2018) Rise of deep learning for genomic, proteomic and metabolomic data integration in precision medicine. OMICS. 10: 630-636.
  2. Khoomrung S*, Wanichthanarak K, Nookaew I, Thamsermsang O, Seubnooch P, Laohapand T, Akarasereenont P. (2017) Metabolomics and integrative omics for the development of Thai traditional medicine. Front. Pharmacol 8: 474.

* = Corresponding author